Seqs
Classify.seqs Generating search database... takes forever - mothur ...
forum.mothur.org
May 5, 2020 ... Hi, I have used the reference file SILVA_132_LSURef_tax_silva_trunc.fasta (593 318 kb), and taxonomy file taxmap_slv_lsu_ref_132.txt (27 175 ...
Question about max-target-seqs option · Issue #29 · bbuchfink ...
github.com
Dec 23, 2015 ... Question, does max-target-seqs=N mean that the overall best N matches are shown, or only the first N that pass the e-value threshold?
classify.seqs with own taxonomy reference files - mothur bugs - mothur
forum.mothur.org
Jun 6, 2013 ... classify.seqs with own taxonomy reference files · The files must match, meaning if a sequence is in the reference file, mothur expects it in the ...
Error in assignTaxonomy using any reference database · Issue #691 ...
github.com
Feb 25, 2019 ... taxa <- assignTaxonomy(seqs=seqtab.nochim,refFasta="silva_nr_v132_train_set.fa.gz",multithread=T,verbose=T,tryRC=F) This command returning ...
Miseq SOP pcr.seqs - Commands in mothur - mothur
forum.mothur.org
Jul 4, 2013 ... bacteria.fasta alignment. You would need to find your primer in the alignment and then see where your primers are mapping to. Alternatively, you ...
NBCI-taxonomic analysis - User Support - QIIME 2 Forum
forum.qiime2.org
Aug 26, 2018 ... I sounds like you would like to do a blast search for all of your reads, which is why I recommended extracting your rep-seqs.qza file. Colin.
Two Polyend Seqs. vs One Polyend Seq. & Squarp Pyramid ...
forum.audiob.us
Mar 8, 2020 ... Two Polyend Seqs. vs One Polyend Seq. & Squarp Pyramid ... I do have the chance to get 2 poly seqs., just to give polyphony right space to move in ...
Issue with generate rep-seqs-dada2.qza file - User Support - QIIME ...
forum.qiime2.org
Jan 25, 2018 ... Hello I tried two command qiime vsearch dereplicate-sequences –i-sequences demux-single-end.qza –o-dereplicated-table table-dada2.qza ...
Blast duration time (+500 000 seqs)
www.biostars.org
May 28, 2017 ... I am using a t430 lenovo( i5-3320M, 2.60GHz, 8GB RAM). Actually, the NCBI process is using about 19 000 kB of memory. These are protein ...
SEQS-M4_Cross Recessed Head Cap Screws with Extra Low ...
www.nbk1560.com
Use dedicated bit SKQB for mounting and removing. SKQB. SEQSCross Recessed Head Cap Screws with Extra Low Profile - Stainless Steel. Product List. SEQS ...